How does a seed know which way is up?
It detects gravity using falling starch grains inside specialised cells — a mechanism that works regardless of light, soil depth or which way up the seed happened to land, which is why planting orientation does not matter.
The mechanism. Certain cells — in the root cap and in the shoot — contain dense, starch-filled organelles called statoliths. Like sediment in a jar, they settle to the bottom of the cell under gravity. Where they settle changes the distribution of the hormone auxin within the tissue.
Why the same hormone makes roots and shoots go opposite ways. This is the elegant part. Auxin accumulates on the lower side of a horizontally placed organ in both cases, but the two tissues respond to it oppositely at those concentrations:
In shoots, auxin promotes cell elongation. The lower side grows faster, so the shoot bends upward.
In roots, the same concentration inhibits elongation. The lower side grows more slowly, so the root bends downward.
One signal, two responses, and the seedling sorts itself out in the dark.
Phototropism works the same way. Auxin migrates away from the light to the shaded side, that side elongates, and the shoot bends towards the light — which is also why a seedling grown in poor light becomes tall and floppy: it is elongating in search of more.
Why it matters practically:
Seeds can be sown any way up. The exception is very large seeds like broad beans, where orientation slightly affects emergence speed and not success.
A tipped-over plant rights itself within days, though the bend in the stem is permanent since plant cells do not move back.
Seed depth matters far more than orientation: a seed has finite reserves, and one sown too deep exhausts them before reaching light. The usual guide is roughly two to three times the seed's own diameter.
Tiny seeds need light to germinate and should be surface-sown and not covered — a genuinely common cause of failure.
This was demonstrated in space, where without gravity roots grow in confused directions and rely on other cues.